Yashwanth Subbannayya

Dr Yashwanth Subbannayya


Dean's Research Fellowship
PhD

About

Dr. Yashwanth Subbannayya uses Systems Biology approaches to identify fundamental molecular mechanisms of infectious diseases, innate immunity, and cancers to develop actionable targets for the clinic. In addition, he uses bioinformatics and computational biology approaches to analyze omics-based data. During his doctoral studies at the Institute of Bioinformatics (IOB) and the Rajiv Gandhi University of Health Sciences (RGUHS), Bangalore, he discovered CAMKK2 as a potential therapeutic target for gastric cancer and identified potential serum biomarkers for gastric cancer. At IOB, he was involved in the draft map of the human proteome project, which was published in Nature, Netpath- a resource on signaling pathways and proteome projects on body fluids and eye tissues. After his Ph.D., he was an Assistant Professor at Yenepoya University, India where he was involved in setting up a high-resolution proteomics and computational omics facility. He later became a researcher at the Centre of Molecular Inflammation Research (CEMIR), Norwegian University of Science and Technology where he worked on several projects including the omics-based characterization of Toll-like receptor (TLR) signaling pathways, the multi-omics characterization of host responses induced by SARS-CoV-2 and the immune cell profiling of lung cancers. He also worked on the omics characterization of rare gynecological cancers and is a management committee member for Norway for the GYNOCARE (gynocare.net) COST action to study these cancers. He has over 50 publications and is a reviewer for 14 peer-reviewed journals. He has supervised 3 Ph.D. students and 22 Master’s students.

ORCID profile:

https://orcid.org/0000-0002-3885-3514

Google Scholar profile:

https://scholar.google.com/citations?user=nA2BbucAAAAJ&hl=en

Personal website:

https://sites.google.com/view/yashwanthsubbannayya

 

Publications

  1. Husain, A. A., Pinto, S. M., Agarwal, N., Behera, S. K., Khulkhule, P., Bhartiya, N., Subbannayya, Y., Prasad, T. S.K., Singh, L. R., Daginawala, H.F., Kashyap, R. S. (2022). Comprehensive Proteomic Analysis of Brucella melitensis ATCC23457 Strain Reveals Metabolic Adaptations in Response to Nutrient Stress. Current Microbiology. In Press.

  2. Pinto, S. M., Subbannayya, Y., Kim, H., Hagen, L, Gorna, M.W., Nieminen, A.I., Bjoras, M., Espevik, T., Kainov, D. E., Kandasamy, R. K. (2022) MultiOMICs landscape of SARS-CoV-2-induced host responses in human lung epithelial cells. bioRxiv; doi: https://doi.org/10.1101/2022.09.06.506768 (Pre-print).

  3. Husain, A. A., Pinto, S. M., Subbannayya, Y., Kapoor, S., Khulkhule, P., Bhartiya, N., Prasad, T. S.K., Daginawala, H.F., Singh, L. R., Kashyap, R. S. (2022). Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock. Proteomics Clinical Applications. e2200009. doi: 10.1002/prca.202200009. Epub ahead of print. PMID: 35925648.

  4. Drago-Ferrante, R., Di Fiore, R., Karouia, F., Subbannayya, Y., Das, S., Mathyk, B.A., Arif, S., Guevara-Cerdán, A. P., Seylani, A., Galsinh, A. S., Kukulska, W., Borg, J., Suleiman, S., Porterfield, D. M., Camera, A., Christenson, L. K., Ronca, A. E., Stelelr, J.G.,Beheshti, A., Calleja-Agius, J. (2022). Extraterrestrial Gynecology: Could Spaceflight Increase the Risk of Developing Cancer in Female Astronauts? An Updated Review. International Journal of Molecular Sciences. 23(13):7465. doi: 10.3390/ijms23137465. PMID: 35806469; PMCID: PMC9267413.

  5. Di Fiore, R., Suleiman, S., Drago-Ferrante. R,, Subbannayya, Y., Pentimalli, F., Giordano, A., Calleja-Agius, J. (2022). Cancer Stem Cells and Their Possible Implications in Cervical Cancer: A Short Review. International Journal of Molecular Sciences. 23(9):5167. doi: 10.3390/ijms23095167. PMID: 35563557; PMCID: PMC9106065.

  6. Deolankar, S.C., Koyangana, S. G., Patil, A. H., Subbannayya, Y., Modi, P.K., Prasad, T.S. K. (2022). Data on multiple post-translational modifications in Alzheimer's disease. Neuroscience Research Notes. 5 (2):153. doi: 10.31117/neuroscirn.v5i2.153

  7. Subbannayya, Y., Bhatta, A., Pinto, S.M., Fitzgerald, K.A., Kandasamy, R.K.(2022) Proteogenomics Analysis Reveals Novel Micropeptides in Primary Human Immune Cells. Immuno, 2, 283-292.

  8. Rex DAB, Subbannayya Y*, Modi PK, Palollathil A, Gopalakrishnan L, Bhandary YP, Prasad TSK, Pinto SM*. (2022). Temporal Quantitative Phosphoproteomics Profiling of Interleukin-33 Signaling Network Reveals Unique Modulators of Monocyte Activation. Cells. 2022 Jan 1;11(1):138. (* Corresponding author)

  9. Kim H*Subbannayya Y*, Humphries F, Skejsol A, Pinto SM, Giambelluca M, Espevik T, Fitzgerald KA, Kandasamy RK. (2021). UMP-CMP kinase 2 gene expression in macrophages is dependent on the IRF3-IFNAR signaling axis. PLoS One. 2021 Oct 27;16(10):e0258989. (* These authors contributed equally to the manuscript)

  10. Subbannayya, Y.*; Di Fiore, R.; Urru, S.A.M.; Calleja-Agius, J.* (2021).The Role of Omics Approaches to Characterize Molecular Mechanisms of Rare Ovarian Cancers: Recent Advances and Future Perspectives. Biomedicines. 9(10):1481. doi: 10.3390/biomedicines9101481. PMID: 34680597; PMCID: PMC8533212. (*Corresponding author)

  11. Di Fiore, R.,Suleiman, S., Drago-Ferrante, R., Félix, A., O'Toole, S., O'Leary, J. J., Ward, M. P., Beirne, J., Yordanov, A., Vasileva-Slaveva, M., Subbannayya, Y., Pentimalli, F., Giordano, A., Calleja-Agius, J. (2021). Emerging role of lncRNA MORT (ZNF667-AS1) in gynecological cancers. International Journal of Molecular Sciences. 22(15):7829.

  12. Pinto, S. M., Kim., H., Subbannayya, Y., Giambelluca, M. S., Bosl, K., Ryan, L., Sharma, A., Kandasamy, R. K. (2021). Comparative proteomic analysis reveals varying impact on immune responses in phorbol 12-myristate-13-acetate-mediated THP-1 monocyte-to-macrophage differentiation. Frontiers in Immunology. 12:679458. doi: 10.3389/fimmu.2021.679458.

  13. Behera, S. K., Kasaragod, S., Karthikkeyan, G., Kotimoole, C. N., Raju, R., Prasad, T.S.K.*, and Subbannayya, Y.* (2021). MS2Compound: A user friendly compound identification tool for LC-MS/MS based metabolomics data. OMICS: A Journal of Integrative Biology. 25(6):389-399.(* Corresponding author)

  14. Mohanty, V.*, Subbannayya,Y.*, Patil, S., Abdulla, R., Ganesh, M.S., Pal, A., Ray, J.G., Sidransky, D., Gowda, H., Prasad, T.S.K., Chatterjee, A. (2021). Molecular alterations in oral cancer between tobacco chewers and smokers using serum proteomics. Cancer Biomarkers.31(4):361-373. doi: 10.3233/CBM-203077 (* These authors contributed equally to the manuscript)

  15. Tøndell, A., Subbannayya, Y., Wahl, S.G.F., Flatberg, A., Sørhaug, S., Børset, M., Haug, M. (2021) Analysis of intratumoral macrophages and T cells in non-small cell lung cancer (NSCLC) indicates a role for immune checkpoint and CD200-CD200R interactions. Cancers. 13(8):1788.

  16. Mohanty, V.*, Subbannayya, Y.*, Shankargouda Patil S., Puttamallesh, V. N., Najar, M.A., Datta, K. K., Pinto S. M., Begum, S., Mohanty, N., Routray, S., Abdulla, R., Ray, J. G., Sidransky, D., Gowda, H., Prasad, T.S.K., Chatterjee, A. (2021). Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. Journal of Cell Communication and Signaling. 15(3):447-459. doi: 10.1007/s12079-021-00609-3. (* These authors contributed equally to the manuscript)

  17. Subbannayya, Y., Haug, M., Pinto, S., Mohanty, V., Meas, H. Z., Prasad, T.S.K., Flo, T. H., Kandasamy, R. K. (2021). The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International Journal of Molecular Sciences. 22(1):E275. PubMed

  18. Subbannayya, Y., Haug, M., Pinto, S., Mohanty, V., Meas, H. Z., Prasad, T.S.K., Flo, T. H., Kandasamy, R. K. (2020). The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. bioRxiv 2020.11.17.385096; doi: https://doi.org/10.1101/2020.11.17.385096 (Pre-print).

  19. Karthikkeyan, G., Pervaje, R., Subbannayya, Y., Patil, A. H., Modi, P. K., Prasad T.S.K. (2020). Plant Omics: Metabolomics and Network Pharmacology of Liquorice, Indian Ayurvedic medicine Yashtimadhu. OMICS: A Journal of Integrative Biology. 24(12):743-755. doi: 10.1089/omi.2020.0156.

  20. Deolankar, S. C., Modi, P.K., Subbannayya, Y., Pervaje, R., and Prasad T.S.K. (2020). Molecular targets from traditional medicines for neuroprotection in human neurodegenerative diseases. OMICS: A Journal of Integrative Biology. 24(7):394-403.

  21. Mohanty, V., Pinto, S. M., Subbannayya, Y., Najar, M.A, Murthy, K. B., Prasad, T. S. K., Murthy, K. R. (2020). Digging deeper for the eye proteome in vitreous substructures: A high-resolution proteome map of the normal human vitreous base. OMICS: A Journal of Integrative Biology. 24(6):379-389.

  22. Pinto, S., Kim, H., Subbannayya, Y., Giambelluca, M., Bosl, K. and Kandasamy, R. K. (2020). Dose-dependent phorbol 12-myristate-13-acetate-1 mediated monocyte-to-macrophage differentiation induces unique proteomic signatures in THP-1 cells. bioRxiv: 2020.2002.2027.968016 (Pre-print).

  23. Subbannayya, Y., Pinto, S. M., Mohanty, V., Dagamajalu, S., Prasad, T. S. K., Murthy, K. R. (2020). What makes cornea immunologically unique and privileged? Mechanistic clues from a high-resolution proteomic landscape of the human cornea. OMICS: A Journal of Integrative Biology. 24(3):129-139. PubMed

  24. D.A.B, Rex, Agarwal N., Prasad T. S. K., Kandasamy, R. K., Subbannayya, Y.*, Pinto, S. M.* (2020). A comprehensive pathway map of IL-18-mediated signalling. Journal of Cell Communication and Signaling. 14(2):257-266. (* Corresponding authors) PubMed

  25. Deolankar, S. C., Patil, A. H., Koyangana, S. G., Subbannayya, Y., Prasad, T. S. K. and Modi, P. K. (2019). Dissecting Alzheimer’s disease molecular substrates by proteomics and discovery of novel post-translational modifications (PTMs). OMICS: A Journal of Integrative Biology. 23(7):350-361. PubMed

  26. Kulkarni, S., Abdulla, R., Jose, M., Adyanthaya, S., Rex, D.A.B., Patil, A. H., Pinto, S.M., Subbannayya, Y.* (2019). Data-driven analysis identifies laminin-integrin-mediated signaling pathway as a determinant for cell differentiation in oral squamous cell carcinoma. Indian Journal of Pathology and Microbiology. 62 (4), 529-536. (* Corresponding authorPubMed

  27. Subbannayya, Y., Pinto, S. M., Bösl, K., Keshava Prasad, T. S.,Kandasamy, R. K. (2019). Dynamics of dual specificity phosphatases and their interplay with protein kinases in immune signaling. International Journal of Molecular Sciences. 20(9). pii: E2086. PubMed

  28. Subbannayya, Y., Pinto, S.M., Bösl, K., Prasad, T.S.K., Kandasamy, R. K. (2019). Dynamics of dual specificity phosphatases and their interplay with protein kinases in immune signaling. bioRxiv 568576; doi: https://doi.org/10.1101/568576 (Pre-print).

  29. Mohanty, V., Subbannayya, Y., Najar, M. A., Pinto, S. M., Kasaragod, S., Karuppiah, H., Sreeramulu, B., Singh, K. K., Dalal, S., Manikkoth, S., Arunachalam, C., Prasad, T. S. K. and Murthy, K. R. (2019). Proteomics and visual health research: Proteome of the human sclera using high-resolution mass spectrometry. OMICS: A Journal of Integrative Biology. 23(2):98-110. PubMed

  30. Bhat, S. A., Gurtoo. S., Deolankar, S. C., Fazili, K. M., Advani, J., Shetty, R., Prasad, T. S. K., Andrabi, S.*, Subbannayya, Y.* (2019). A network map of netrin receptor UNC5B-mediated signaling. Journal of Cell Communication and Signaling. 13(1):121-127. (* Corresponding authors). PubMed

  31. Pinto, S. M., Subbannayya, Y., Prasad, T. S. K. (2019). Functional Proteomic Analysis to Characterize Signaling Crosstalk. Functional Proteomics: Methods and Protocols. X. Wang and M. Kuruc. New York, NY, Springer New York: 197-224. PubMed

  32. Karthikkeyan, G.*, Subbannayya, Y.*, Najar, M. A., Mohanty, V., Pinto, S. M., Arunachalam, C., Prasad, T. S. K., and Murthy, K. R. (2018). Human optic nerve - an enhanced proteomic expression profile. OMICS: A Journal of Integrative Biology. 22(10):642-652. (* These authors contributed equally to the manuscriptPubMed

  33. Subbannayya, Y. * , Karthikkeyan, G., Pinto S. M., Kapoor, S., Tyagi A., Pervaje, S. K., Pervaje R., Prasad T. S. K. * (2018) Global metabolite profiling and network pharmacology of Triphala identifies neuromodulatory receptor proteins as potential targets. Journal of Proteins & Proteomics. 9(2), 2018: 101-114. (* Corresponding authors).

  34. Pinto, S. M., Verma, R, Advani, J., Chatterjee, O., Patil, A. H., Kapoor, S., Subbannayya, Y., Raja, R., Gandotra, S. and Prasad, T. S. K. (2018). Integrated multi-omic analysis of Mycobacterium tuberculosis H37Ra redefines virulence attributes. Frontiers in Microbiology. 9:1314 . PubMed

  35. Pinto, S. M., Subbannayya, Y., Rex, D. A. B., Raju, R., Chatterjee, O., Advani, J., Radhakrishnan, A., Prasad, T. S. K., Wani, M. R. and Pandey, A. (2018). A network map of IL-33 signaling pathway. Journal of Cell Communication and Signaling. 12(3):615-624 . PubMed

  36. Abdulla, R.*, Adyanthaya., S., Kini, P., Mohanty, V., D'Souza, N. and Subbannayya, Y.* (2018). Clinico-pathological analysis of oral squamous cell carcinoma among the younger age group in coastal Karnataka, India- A retrospective study. Journal of Oral and Maxillofacial Pathology. 22(2): 180–187 . (* Corresponding authors).

  37. Advani, J., Subbannayya, Y., Gowda H., Chatterjee, A. (2017). Bioinformatics advances to accelerate omics innovations and applications in the postgenomic era. OMICS: A Journal of Integrative Biology. 21(12):750.

  38. Advani, J.*, Subbannayya, Y.*, Patel, K., Khan, A. A., Patil, A. H., Jain, A. P., Solanki, H. S., Radhakrishnan, A., Pinto, S. M., Sahasrabuddhe, N. A., Thomas, J. K., Mathur, P. P., Nair, B., Chang, X., Prasad, T. S. K., Sidransky, D., Gowda H., Chatterjee, A. (2017). Long term cigarette smoke exposure and changes in miRNA expression and proteome in non-small cell lung cancer. OMICS: A Journal of Integrative Biology. 21, 390-403. (* These authors contributed equally to the manuscript).

  39. Murthy, K. R., Dammalli, M., Pinto, S. M., Murthy, K. B., Nirujogi, R. S., Madugundu A. K., Dey, G., Subbannayya, Y., Mishra, U.K., Nair, B., Gowda, H. and Prasad, T. S. K. (2016). A comprehensive proteomics analysis of the human iris tissue: Ready to embrace postgenomics precision medicine in ophthalmology? OMICS: A Journal of Integrative Biology. 9, 510-519.

  40. Subbannayya, Y., Pinto, S. M., Gowda, H. and Prasad, T. S. K. (2016). Proteogenomics for understanding oncology: recent advances and future prospects. Expert Review of Proteomics. 13(3):297-308.

  41. Subbannayya, Y., Mir, S. A., Renuse, S., Manda, S. S., Pinto, S. M., Puttamallesh, V. N., Solanki, H. S., Manju, H .C., Syed, N., Sharma, R., Christopher, R., Vijayakumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Chatterjee, A., Pandey, A. and Gowda, H. (2015). Identification of differentially expressed serum proteins in gastric adenocarcinoma.Journal of Proteomics. 127(Pt A):80-8.

  42. Murthy, K. R., Rajagopalan, P., Pinto, S. M., Advani, J., Murthy, P. R., Goel, R., Subbannayya, Y., Balakrishnan, L., Dash, M., Anil, A. K., Manda, S. M., Nirujogi, R. S., Kelkar, D. S., Sathe, G. J., Dey, G., Chatterjee, A., Gowda, H., Chakravarti, S., Shankar, S., Sahasrabuddhe, N. A., Nair, B., Somani, B. L., Prasad, T. S. K. and Pandey, A. (2015). Proteomics of human aqueous humor. OMICS: A Journal of Integrative Biology. 19, 283-293.

  43. Pinto, S. M., Nirujogi, R. S., Leal-Rojas, P., Patil, A. H., Manda, S. S., Subbannayya, Y., Roa, J. C., Chatterjee, A., Prasad, T. S. K and Pandey, A. (2015). Quantitative phosphoproteomic analysis of IL-33 mediated signaling. Proteomics. 15, 532-44.

  44. Subbannayya, Y., Syed, N., Barbhuiya, M. A., Raja, R., Marimuthu, A., Sahasrabuddhe, N. A., Pinto, S. M., Manda, S. S., Renuse, S., Manju, H. C., Zameer, M. A. L., Sharma, J., Brait, M., Srikumar, K., Roa, J. C., Vijaya Kumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Pandey, A., Gowda, H. and Chatterjee, A. (2015). Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. Cancer Biology and Therapy .6, 336-345.

  45. Kim, M. S., Pinto, S. M., Getnet, D., Nirujogi, R. S., Manda, S. S., Chaerkady, R., Madugundu, A. K., Kelkar, D. S., Isserlin, R., Jain, S., Thomas, J. K., Muthusamy, B., Leal-Rojas, P., Kumar, P., Sahasrabuddhe, N. A., Balakrishnan, L., Advani, J., George, B., Renuse, S., Selvan, L. D. N., Patil, A. H., Nanjappa, V., Radhakrishnan, A., Prasad, S., Subbannayya, T., Raju, R., Kumar, M., Sreenivasamurthy, S. K., Marimuthu, A., Sathe, G. J., Chavan, S., Datta, K. K., Subbannayya, Y., Sahu, A., Yelamanchi, S. D., Jayaram, S., Rajagopalan, P., Sharma, J., Murthy, K. R., Syed, N., Goel, R., Khan, A. A., Ahmad, S., Dey, G., Mudgal, K., Chatterjee, A., Huang, T. C., Zhong, J., Wu, X., Shaw, P. G., Freed, D., Zahari, M. S., Mukherjee, K. K., Shankar, S., Mahadevan, A., Lam, H., Mitchell, C. J., Shankar, S. K., Satishchandra, P., Schroeder, J. T., Sirdeshmukh, R., Maitra, A., Leach, S. D., Drake, C. G., Halushka, M. K., Prasad, T. S. K., Hruban, R. H., Kerr, C. L., Bader, G. D., Iacobuzio-Donahue, C. A., Gowda, H. and Pandey, A. (2014). A draft map of the human proteome. Nature. 509, 575-581.

  46. Kelkar, D. S., Provost. E., Chaerkady, R., Muthusamy, B., Manda, S. S., Subbannayya, T., Selvan, L. D. N., Wang, C. H., Datta, K. K., Woo, S., Dwivedi, S. B., Renuse, S., Getnet, D., Huang, T. C., Kim, M. S., Pinto, S. M., Mitchell, C. J., Madugundu, A. K., Kumar, P., Sharma, J. Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Prasad, T. S. K., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, S. D. and Pandey, A. (2014). Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.Molecular and Cellular Proteomics. 13, 3184-98.

  47. Murthy, K. R., Goel, R., Subbannayya, Y., Jacob, H. K. C., Murthy, P. R., Srikanth, S. M., Patil, A. H., Sharma, R., Sahasrabuddhe, N. A., Parashar, A., Nair, B. G., Krishna V., Prasad, T. S. K., Gowda, H. and Pandey, A. (2014). Proteomic analysis of human vitreous humor. Clinical Proteomics. 11, 29.

  48. Subbannayya, Y., Anuja, K., Advani, J., Ojha, U. K., Nanjappa, V., George, B., Sonawane, A., Kumar, R. V., Ramaswamy, G., Pandey, A., Somani, B. L. and Raju, R. (2014). A network map of the Gastrin signaling pathway. Journal of Cell Communication and Signaling . 8(2):165-70.

  49. Balakrishnan, L., Nirujogi, R. S., Ahmad, S., Bhattacharjee, M., Srikanth, S. M., Renuse, S., Kelkar, D. S., Subbannayya, Y., Raju, R., Goel, R., Thomas, J. K., Kaur, N., Dhillon, M., Tankala, S. G., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 11,6.

  50. Balakrishnan, L., Bhattacharjee, M., Ahmad, S., Nirujogi, R. S., Renuse, S., Subbannayya, Y., Marimuthu, A., Srikanth, S. M., Raju, R., Dhillon, M., Kaur, N., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients.Clinical Proteomics. 11,1.

  51. Ramadasan-Nair, R., Gayathri, N., Mishra, S., Sunitha, B., Mythri, R., Nalini, A., Subbannayya, Y., Harsha, H. C., Kolthur-Seetharam, U. and Bharath, M. M. (2014). Mitochondrial alterations and oxidative stress in an acute transient mouse model of muscle degeneration: Implications for muscular dystrophy and related muscle pathologies.Journal of Biological Chemistry. 289, 485-509.

  52. Kotigadde, S., Anusha G.R., Sandya V., Subbannayya, Y., Subbannayya, T., Nayak, S. (2012). Effect of water storage in silver container on the viability of enteric bacterial pathogens. The Journal of communicable diseases. 44(4):239-243.

  53. Marimuthu, A., Subbannayya, Y., Sahasrabuddhe, N. A., Balakrishnan, L., Syed, N., Sekhar, N. R., Katte, T. V., Pinto, S. M., Srikanth, S. M., Kumar, P., Pawar, H., Kashyap, M. K., Maharudraiah, J., Ashktorab, H., Smoot, D. T., Ramaswamy, G., Kumar, R. V., Cheng, Y., Meltzer, S. J., Roa, J. C., Chaerkady, R., Prasad, T. S. K., Harsha, H. C., Chatterjee, A. and Pandey, A. (2012). SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics - Clinical Applications7, 355-366.

  54. Kumar, G. S. S., Venugopal, A. K., Kashyap, M. K., Raju, R., Marimuthu, A., Palapetta, S. M., Subbannayya, Y., Goel, R., Chawla, A., Dikshit, J. B., Tata, P., Harsha, H. C., Maharudraiah, J., Ramachandra, Y. L., Satishchandra, P., Prasad, T. S. K., Pandey, A., Mahadevan, A. and Shankar, S. K. (2012). Gene expression profiling of tuberculous meningitis co-infected with HIV. Journal of Proteomics and Bioinformatics. 5, 235-244.

  55. Prasad, T. S. K., Harsha, H. C., Keerthikumar, S., Sekhar, N. R., Selvan, L. D. N., Kumar, P., Pinto, S. M., Muthusamy, B., Subbannayya, Y., Renuse, S., Chaerkady, R., Mathur, P. P., Ravikumar, R. and Pandey, A. (2012). Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry. Journal of Proteome Research. 11, 247-260.

  56. Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S., Syed, N., Srikanth, M. S., Sathe, G. J., Ahmad, S., Chavan, S. N., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A. (2011). NetSlim: High-confidence curated signaling maps. Database. 2011, bar032.

  57. Marimuthu, A., O'Meally, R., Chaerkady, R., Subbannayya, Y., Nanjappa, V., Kumar, P., Kelkar, D., Pinto, S., Sharma, R., Renuse, S., Goel, R., Christopher, R., Delanghe, B., Cole, R. N., Harsha, H. C. and Pandey, A. (2011). A comprehensive map of the human urinary proteome. Journal of Proteome Research. 10, 2734-2743.

  58. Marimuthu, A., Jacob, H. K. C., Jakharia, A., Subbannayya, Y., Keerthikumar, S., Kashyap, M. K., Goel, R., Balakrishnan, L., Dwivedi, S., Pathare, S., Dikshit, J. B., Maharudraiah, J., Singh, S., Kumar, G. S. S., Vijayakumar, M., Veerendra Kumar, K. V., Premalatha, C. S., Tata, P., Hariharan, R., Roa, J. C., Prasad, T. S. K., Chaerkady, R., Kumar, R. V. and Pandey, A.. (2011). Gene expression profiling of gastric cancer. Journal of Proteomics and Bioinformatics . 4, 74-82.

  59. Kashyap, M .K., Harsha, H. C., Renuse, S., Pawar, H., Sahasrabuddhe, N. A., Kim, M. S., Marimuthu, A., Keerthikumar, S., Muthusamy, B., Kandasamy, K., Subbannayya, Y., Prasad, T. S. K., Mahmood, R., Chaerkady, R., Meltzer, S. J., Kumar, R. V., Rustgi, A. K. and Pandey, A. (2010). SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer Biology and Therapy . 10, 796-810.

  60. Kandasamy, K., Mohan, S. S., Raju, R., Keerthikumar, S., Kumar, G. S. S., Venugopal, A. K., Telikicherla, D., Navarro, J. D., Mathivanan, S., Pecquet, C., Gollapudi, S. K., Tattikota, S. G., Mohan, S., Padhukasahasram, H., Subbannayya, Y., Goel, R., Jacob, H. K. C., Zhong, J., Sekhar, R., Nanjappa, V., Balakrishnan, L., Subbaiah, R., Ramachandra, Y. L., Rahiman, B. A., Prasad, T. S. K., Lin, J., Houtman, J. C. D., Desiderio, S., Renauld, J., Constantinescu, S. N., Ohara, O., Hirano, T., Kubo, M., Singh, S., Khatri, P., Draghici, S., Bader, G. D., Sander, C., Leonard, W. J. and Pandey, A. (2010). NetPath: A public resource of curated signal transduction pathways. Genome Biology .11, R3.

  61. Nayak, S.B., Yashwanth, S, Pinto, S.M., Bhat, V.R., Mayya, S.S. (2005) Serum copper, ceruloplasmin, protein thiols and thiobarbituric acid reactive substance status in liver cancer associated with elevated levels of alpha-fetoprotein. Indian Journal of Physiology and Pharmacology. 49(3):341-44