Yashwanth Subbannayya

Dr Yashwanth Subbannayya

Dean's Research Fellowship
PhD
+44 (0)1483 682934
07 AY 02

Academic and research departments

School of Biosciences, Faculty of Health and Medical Sciences.

About

Publications

  1. Di Fiore, R., Suleiman, S., Drago-Ferrante, R., Subbannayya, Y., Suleiman, S., Vasileva-Slaveva, M., Yordanov, A., Pentimalli, F., Giordano, A., Calleja-Agius, J. The Role of FBXW7 in Gynecologic Malignancies. Cells. 2023 May 17;12(10):1415. doi: 10.3390/cells12101415. PMCID: PMC10216672.

  2. Sanjeev, D., Dagamajalu, S., Shaji, V., George, M., Subbannayya, Y., Prasad, T.S.K., Raju, R., Devasahayam Arokia Balaya, R. A network map of macrophage-stimulating protein (MSP) signaling. Journal of Cell Communication and Signaling. 2023 May 4. doi: 10.1007/s12079-023-00755-w. Epub ahead of print. PMID: 37142846.

  3. Pinto, S. M., Subbannayya, Y., Kim, H., Hagen, L, Gorna, M.W., Nieminen, A.I., Bjoras, M., Espevik, T., Kainov, D. E., Kandasamy, R. K. (2022). Multi-OMICs landscape of SARS-CoV-2-induced host responses in human lung epithelial cells. iScience. 2023 Jan 20;26(1):105895. doi: 10.1016/j.isci.2022.105895. Epub 2022 Dec 28. PMID: 36590899; PMCID: PMC9794516. (* These authors contributed equally to the manuscript)

  4. Husain, A. A., Pinto, S. M., Agarwal, N., Behera, S. K., Khulkhule, P., Bhartiya, N., Subbannayya, Y., Prasad, T. S.K., Singh, L. R., Daginawala, H.F., Kashyap, R. S. (2022). Comprehensive Proteomic Analysis of Brucella melitensis ATCC23457 Strain Reveals Metabolic Adaptations in Response to Nutrient Stress. Current Microbiology. In Press.

  5. Pinto, S. M., Subbannayya, Y., Kim, H., Hagen, L, Gorna, M.W., Nieminen, A.I., Bjoras, M., Espevik, T., Kainov, D. E., Kandasamy, R. K. (2022) MultiOMICs landscape of SARS-CoV-2-induced host responses in human lung epithelial cells. bioRxiv; doi: https://doi.org/10.1101/2022.09.06.506768 (Pre-print).

  6. Husain, A. A., Pinto, S. M., Subbannayya, Y., Kapoor, S., Khulkhule, P., Bhartiya, N., Prasad, T. S.K., Daginawala, H.F., Singh, L. R., Kashyap, R. S. (2022). Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock. Proteomics Clinical Applications. e2200009. doi: 10.1002/prca.202200009. Epub ahead of print. PMID: 35925648.

  7. Drago-Ferrante, R., Di Fiore, R., Karouia, F., Subbannayya, Y., Das, S., Mathyk, B.A., Arif, S., Guevara-Cerdán, A. P., Seylani, A., Galsinh, A. S., Kukulska, W., Borg, J., Suleiman, S., Porterfield, D. M., Camera, A., Christenson, L. K., Ronca, A. E., Stelelr, J.G.,Beheshti, A., Calleja-Agius, J. (2022). Extraterrestrial Gynecology: Could Spaceflight Increase the Risk of Developing Cancer in Female Astronauts? An Updated Review. International Journal of Molecular Sciences. 23(13):7465. doi: 10.3390/ijms23137465. PMID: 35806469; PMCID: PMC9267413.

  8. Di Fiore, R., Suleiman, S., Drago-Ferrante. R,, Subbannayya, Y., Pentimalli, F., Giordano, A., Calleja-Agius, J. (2022). Cancer Stem Cells and Their Possible Implications in Cervical Cancer: A Short Review. International Journal of Molecular Sciences. 23(9):5167. doi: 10.3390/ijms23095167. PMID: 35563557; PMCID: PMC9106065.

  9. Deolankar, S.C., Koyangana, S. G., Patil, A. H., Subbannayya, Y., Modi, P.K., Prasad, T.S. K. (2022). Data on multiple post-translational modifications in Alzheimer's disease. Neuroscience Research Notes. 5 (2):153. doi: 10.31117/neuroscirn.v5i2.153

  10. Subbannayya, Y., Bhatta, A., Pinto, S.M., Fitzgerald, K.A., Kandasamy, R.K.(2022) Proteogenomics Analysis Reveals Novel Micropeptides in Primary Human Immune Cells. Immuno, 2, 283-292.

  11. Rex DAB, Subbannayya Y*, Modi PK, Palollathil A, Gopalakrishnan L, Bhandary YP, Prasad TSK, Pinto SM*. (2022). Temporal Quantitative Phosphoproteomics Profiling of Interleukin-33 Signaling Network Reveals Unique Modulators of Monocyte Activation. Cells. 2022 Jan 1;11(1):138. (* Corresponding author)

  12. Kim H*, Subbannayya Y*, Humphries F, Skejsol A, Pinto SM, Giambelluca M, Espevik T, Fitzgerald KA, Kandasamy RK. (2021). UMP-CMP kinase 2 gene expression in macrophages is dependent on the IRF3-IFNAR signaling axis. PLoS One. 2021 Oct 27;16(10):e0258989. (* These authors contributed equally to the manuscript)

  13. Subbannayya, Y.*; Di Fiore, R.; Urru, S.A.M.; Calleja-Agius, J.* (2021).The Role of Omics Approaches to Characterize Molecular Mechanisms of Rare Ovarian Cancers: Recent Advances and Future Perspectives. Biomedicines. 9(10):1481. doi: 10.3390/biomedicines9101481. PMID: 34680597; PMCID: PMC8533212. (*Corresponding author)

  14. Di Fiore, R.,Suleiman, S., Drago-Ferrante, R., Félix, A., O'Toole, S., O'Leary, J. J., Ward, M. P., Beirne, J., Yordanov, A., Vasileva-Slaveva, M., Subbannayya, Y., Pentimalli, F., Giordano, A., Calleja-Agius, J. (2021). Emerging role of lncRNA MORT (ZNF667-AS1) in gynecological cancers. International Journal of Molecular Sciences. 22(15):7829.

  15. Pinto, S. M., Kim., H., Subbannayya, Y., Giambelluca, M. S., Bosl, K., Ryan, L., Sharma, A., Kandasamy, R. K. (2021). Comparative proteomic analysis reveals varying impact on immune responses in phorbol 12-myristate-13-acetate-mediated THP-1 monocyte-to-macrophage differentiation. Frontiers in Immunology. 12:679458. doi: 10.3389/fimmu.2021.679458.

  16. Behera, S. K., Kasaragod, S., Karthikkeyan, G., Kotimoole, C. N., Raju, R., Prasad, T.S.K.*, and Subbannayya, Y.* (2021). MS2Compound: A user friendly compound identification tool for LC-MS/MS based metabolomics data. OMICS: A Journal of Integrative Biology. 25(6):389-399.(* Corresponding author)

  17. Mohanty, V.*, Subbannayya,Y.*, Patil, S., Abdulla, R., Ganesh, M.S., Pal, A., Ray, J.G., Sidransky, D., Gowda, H., Prasad, T.S.K., Chatterjee, A. (2021). Molecular alterations in oral cancer between tobacco chewers and smokers using serum proteomics. Cancer Biomarkers.31(4):361-373. doi: 10.3233/CBM-203077 (* These authors contributed equally to the manuscript)

  18. Tøndell, A., Subbannayya, Y., Wahl, S.G.F., Flatberg, A., Sørhaug, S., Børset, M., Haug, M. (2021) Analysis of intratumoral macrophages and T cells in non-small cell lung cancer (NSCLC) indicates a role for immune checkpoint and CD200-CD200R interactions. Cancers. 13(8):1788.

  19. Mohanty, V.*, Subbannayya, Y.*, Shankargouda Patil S., Puttamallesh, V. N., Najar, M.A., Datta, K. K., Pinto S. M., Begum, S., Mohanty, N., Routray, S., Abdulla, R., Ray, J. G., Sidransky, D., Gowda, H., Prasad, T.S.K., Chatterjee, A. (2021). Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. Journal of Cell Communication and Signaling. 15(3):447-459. doi: 10.1007/s12079-021-00609-3. (* These authors contributed equally to the manuscript)

  20. Subbannayya, Y., Haug, M., Pinto, S., Mohanty, V., Meas, H. Z., Prasad, T.S.K., Flo, T. H., Kandasamy, R. K. (2021). The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International Journal of Molecular Sciences. 22(1):E275. PubMed

  21. Subbannayya, Y., Haug, M., Pinto, S., Mohanty, V., Meas, H. Z., Prasad, T.S.K., Flo, T. H., Kandasamy, R. K. (2020). The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. bioRxiv 2020.11.17.385096; doi: https://doi.org/10.1101/2020.11.17.385096 (Pre-print).

  22. Karthikkeyan, G., Pervaje, R., Subbannayya, Y., Patil, A. H., Modi, P. K., Prasad T.S.K. (2020). Plant Omics: Metabolomics and Network Pharmacology of Liquorice, Indian Ayurvedic medicine Yashtimadhu. OMICS: A Journal of Integrative Biology. 24(12):743-755. doi: 10.1089/omi.2020.0156.

  23. Deolankar, S. C., Modi, P.K., Subbannayya, Y., Pervaje, R., and Prasad T.S.K. (2020). Molecular targets from traditional medicines for neuroprotection in human neurodegenerative diseases. OMICS: A Journal of Integrative Biology. 24(7):394-403.

  24. Mohanty, V., Pinto, S. M., Subbannayya, Y., Najar, M.A, Murthy, K. B., Prasad, T. S. K., Murthy, K. R. (2020). Digging deeper for the eye proteome in vitreous substructures: A high-resolution proteome map of the normal human vitreous base. OMICS: A Journal of Integrative Biology. 24(6):379-389.

  25. Pinto, S., Kim, H., Subbannayya, Y., Giambelluca, M., Bosl, K. and Kandasamy, R. K. (2020). Dose-dependent phorbol 12-myristate-13-acetate-1 mediated monocyte-to-macrophage differentiation induces unique proteomic signatures in THP-1 cells. bioRxiv: 2020.2002.2027.968016 (Pre-print).

  26. Subbannayya, Y., Pinto, S. M., Mohanty, V., Dagamajalu, S., Prasad, T. S. K., Murthy, K. R. (2020). What makes cornea immunologically unique and privileged? Mechanistic clues from a high-resolution proteomic landscape of the human cornea. OMICS: A Journal of Integrative Biology. 24(3):129-139. PubMed

  27. D.A.B, Rex, Agarwal N., Prasad T. S. K., Kandasamy, R. K., Subbannayya, Y.*, Pinto, S. M.* (2020). A comprehensive pathway map of IL-18-mediated signalling. Journal of Cell Communication and Signaling. 14(2):257-266. (* Corresponding authors) PubMed

  28. Deolankar, S. C., Patil, A. H., Koyangana, S. G., Subbannayya, Y., Prasad, T. S. K. and Modi, P. K. (2019). Dissecting Alzheimer’s disease molecular substrates by proteomics and discovery of novel post-translational modifications (PTMs). OMICS: A Journal of Integrative Biology. 23(7):350-361. PubMed

  29. Kulkarni, S., Abdulla, R., Jose, M., Adyanthaya, S., Rex, D.A.B., Patil, A. H., Pinto, S.M., Subbannayya, Y.* (2019). Data-driven analysis identifies laminin-integrin-mediated signaling pathway as a determinant for cell differentiation in oral squamous cell carcinoma. Indian Journal of Pathology and Microbiology. 62 (4), 529-536. (* Corresponding author) PubMed

  30. Subbannayya, Y., Pinto, S. M., Bösl, K., Keshava Prasad, T. S.,Kandasamy, R. K. (2019). Dynamics of dual specificity phosphatases and their interplay with protein kinases in immune signaling. International Journal of Molecular Sciences. 20(9). pii: E2086. PubMed

  31. Subbannayya, Y., Pinto, S.M., Bösl, K., Prasad, T.S.K., Kandasamy, R. K. (2019). Dynamics of dual specificity phosphatases and their interplay with protein kinases in immune signaling. bioRxiv 568576; doi: https://doi.org/10.1101/568576 (Pre-print).

  32. Mohanty, V., Subbannayya, Y., Najar, M. A., Pinto, S. M., Kasaragod, S., Karuppiah, H., Sreeramulu, B., Singh, K. K., Dalal, S., Manikkoth, S., Arunachalam, C., Prasad, T. S. K. and Murthy, K. R. (2019). Proteomics and visual health research: Proteome of the human sclera using high-resolution mass spectrometry. OMICS: A Journal of Integrative Biology. 23(2):98-110. PubMed

  33. Bhat, S. A., Gurtoo. S., Deolankar, S. C., Fazili, K. M., Advani, J., Shetty, R., Prasad, T. S. K., Andrabi, S.*, Subbannayya, Y.* (2019). A network map of netrin receptor UNC5B-mediated signaling. Journal of Cell Communication and Signaling. 13(1):121-127. (* Corresponding authors). PubMed

  34. Pinto, S. M., Subbannayya, Y., Prasad, T. S. K. (2019). Functional Proteomic Analysis to Characterize Signaling Crosstalk. Functional Proteomics: Methods and Protocols. X. Wang and M. Kuruc. New York, NY, Springer New York: 197-224. PubMed

  35. Karthikkeyan, G.*, Subbannayya, Y.*, Najar, M. A., Mohanty, V., Pinto, S. M., Arunachalam, C., Prasad, T. S. K., and Murthy, K. R. (2018). Human optic nerve - an enhanced proteomic expression profile. OMICS: A Journal of Integrative Biology. 22(10):642-652. (* These authors contributed equally to the manuscript) PubMed

  36. Subbannayya, Y. * , Karthikkeyan, G., Pinto S. M., Kapoor, S., Tyagi A., Pervaje, S. K., Pervaje R., Prasad T. S. K. * (2018) Global metabolite profiling and network pharmacology of Triphala identifies neuromodulatory receptor proteins as potential targets. Journal of Proteins & Proteomics. 9(2), 2018: 101-114. (* Corresponding authors).

  37. Pinto, S. M., Verma, R, Advani, J., Chatterjee, O., Patil, A. H., Kapoor, S., Subbannayya, Y., Raja, R., Gandotra, S. and Prasad, T. S. K. (2018). Integrated multi-omic analysis of Mycobacterium tuberculosis H37Ra redefines virulence attributes. Frontiers in Microbiology. 9:1314 . PubMed

  38. Pinto, S. M., Subbannayya, Y., Rex, D. A. B., Raju, R., Chatterjee, O., Advani, J., Radhakrishnan, A., Prasad, T. S. K., Wani, M. R. and Pandey, A. (2018). A network map of IL-33 signaling pathway. Journal of Cell Communication and Signaling. 12(3):615-624 . PubMed

  39. Abdulla, R.*, Adyanthaya., S., Kini, P., Mohanty, V., D'Souza, N. and Subbannayya, Y.* (2018). Clinico-pathological analysis of oral squamous cell carcinoma among the younger age group in coastal Karnataka, India- A retrospective study. Journal of Oral and Maxillofacial Pathology. 22(2): 180–187 . (* Corresponding authors).

  40. Advani, J., Subbannayya, Y., Gowda H., Chatterjee, A. (2017). Bioinformatics advances to accelerate omics innovations and applications in the postgenomic era. OMICS: A Journal of Integrative Biology. 21(12):750.

  41. Advani, J.*, Subbannayya, Y.*, Patel, K., Khan, A. A., Patil, A. H., Jain, A. P., Solanki, H. S., Radhakrishnan, A., Pinto, S. M., Sahasrabuddhe, N. A., Thomas, J. K., Mathur, P. P., Nair, B., Chang, X., Prasad, T. S. K., Sidransky, D., Gowda H., Chatterjee, A. (2017). Long term cigarette smoke exposure and changes in miRNA expression and proteome in non-small cell lung cancer. OMICS: A Journal of Integrative Biology. 21, 390-403. (* These authors contributed equally to the manuscript).

  42. Murthy, K. R., Dammalli, M., Pinto, S. M., Murthy, K. B., Nirujogi, R. S., Madugundu A. K., Dey, G., Subbannayya, Y., Mishra, U.K., Nair, B., Gowda, H. and Prasad, T. S. K. (2016). A comprehensive proteomics analysis of the human iris tissue: Ready to embrace postgenomics precision medicine in ophthalmology? OMICS: A Journal of Integrative Biology. 9, 510-519.

  43. Subbannayya, Y., Pinto, S. M., Gowda, H. and Prasad, T. S. K. (2016). Proteogenomics for understanding oncology: recent advances and future prospects. Expert Review of Proteomics. 13(3):297-308.

  44. Subbannayya, Y., Mir, S. A., Renuse, S., Manda, S. S., Pinto, S. M., Puttamallesh, V. N., Solanki, H. S., Manju, H .C., Syed, N., Sharma, R., Christopher, R., Vijayakumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Chatterjee, A., Pandey, A. and Gowda, H. (2015). Identification of differentially expressed serum proteins in gastric adenocarcinoma.Journal of Proteomics. 127(Pt A):80-8.

  45. Murthy, K. R., Rajagopalan, P., Pinto, S. M., Advani, J., Murthy, P. R., Goel, R., Subbannayya, Y., Balakrishnan, L., Dash, M., Anil, A. K., Manda, S. M., Nirujogi, R. S., Kelkar, D. S., Sathe, G. J., Dey, G., Chatterjee, A., Gowda, H., Chakravarti, S., Shankar, S., Sahasrabuddhe, N. A., Nair, B., Somani, B. L., Prasad, T. S. K. and Pandey, A. (2015). Proteomics of human aqueous humor. OMICS: A Journal of Integrative Biology. 19, 283-293.

  46. Pinto, S. M., Nirujogi, R. S., Leal-Rojas, P., Patil, A. H., Manda, S. S., Subbannayya, Y., Roa, J. C., Chatterjee, A., Prasad, T. S. K and Pandey, A. (2015). Quantitative phosphoproteomic analysis of IL-33 mediated signaling. Proteomics. 15, 532-44.

  47. Subbannayya, Y., Syed, N., Barbhuiya, M. A., Raja, R., Marimuthu, A., Sahasrabuddhe, N. A., Pinto, S. M., Manda, S. S., Renuse, S., Manju, H. C., Zameer, M. A. L., Sharma, J., Brait, M., Srikumar, K., Roa, J. C., Vijaya Kumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Pandey, A., Gowda, H. and Chatterjee, A. (2015). Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. Cancer Biology and Therapy .6, 336-345.

  48. Kim, M. S., Pinto, S. M., Getnet, D., Nirujogi, R. S., Manda, S. S., Chaerkady, R., Madugundu, A. K., Kelkar, D. S., Isserlin, R., Jain, S., Thomas, J. K., Muthusamy, B., Leal-Rojas, P., Kumar, P., Sahasrabuddhe, N. A., Balakrishnan, L., Advani, J., George, B., Renuse, S., Selvan, L. D. N., Patil, A. H., Nanjappa, V., Radhakrishnan, A., Prasad, S., Subbannayya, T., Raju, R., Kumar, M., Sreenivasamurthy, S. K., Marimuthu, A., Sathe, G. J., Chavan, S., Datta, K. K., Subbannayya, Y., Sahu, A., Yelamanchi, S. D., Jayaram, S., Rajagopalan, P., Sharma, J., Murthy, K. R., Syed, N., Goel, R., Khan, A. A., Ahmad, S., Dey, G., Mudgal, K., Chatterjee, A., Huang, T. C., Zhong, J., Wu, X., Shaw, P. G., Freed, D., Zahari, M. S., Mukherjee, K. K., Shankar, S., Mahadevan, A., Lam, H., Mitchell, C. J., Shankar, S. K., Satishchandra, P., Schroeder, J. T., Sirdeshmukh, R., Maitra, A., Leach, S. D., Drake, C. G., Halushka, M. K., Prasad, T. S. K., Hruban, R. H., Kerr, C. L., Bader, G. D., Iacobuzio-Donahue, C. A., Gowda, H. and Pandey, A. (2014). A draft map of the human proteome. Nature. 509, 575-581.

  49. Kelkar, D. S., Provost. E., Chaerkady, R., Muthusamy, B., Manda, S. S., Subbannayya, T., Selvan, L. D. N., Wang, C. H., Datta, K. K., Woo, S., Dwivedi, S. B., Renuse, S., Getnet, D., Huang, T. C., Kim, M. S., Pinto, S. M., Mitchell, C. J., Madugundu, A. K., Kumar, P., Sharma, J. Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Prasad, T. S. K., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, S. D. and Pandey, A. (2014). Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.Molecular and Cellular Proteomics. 13, 3184-98.

  50. Murthy, K. R., Goel, R., Subbannayya, Y., Jacob, H. K. C., Murthy, P. R., Srikanth, S. M., Patil, A. H., Sharma, R., Sahasrabuddhe, N. A., Parashar, A., Nair, B. G., Krishna V., Prasad, T. S. K., Gowda, H. and Pandey, A. (2014). Proteomic analysis of human vitreous humor. Clinical Proteomics. 11, 29.

  51. Subbannayya, Y., Anuja, K., Advani, J., Ojha, U. K., Nanjappa, V., George, B., Sonawane, A., Kumar, R. V., Ramaswamy, G., Pandey, A., Somani, B. L. and Raju, R. (2014). A network map of the Gastrin signaling pathway. Journal of Cell Communication and Signaling . 8(2):165-70.

  52. Balakrishnan, L., Nirujogi, R. S., Ahmad, S., Bhattacharjee, M., Srikanth, S. M., Renuse, S., Kelkar, D. S., Subbannayya, Y., Raju, R., Goel, R., Thomas, J. K., Kaur, N., Dhillon, M., Tankala, S. G., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 11,6.

  53. Balakrishnan, L., Bhattacharjee, M., Ahmad, S., Nirujogi, R. S., Renuse, S., Subbannayya, Y., Marimuthu, A., Srikanth, S. M., Raju, R., Dhillon, M., Kaur, N., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients.Clinical Proteomics. 11,1.

  54. Ramadasan-Nair, R., Gayathri, N., Mishra, S., Sunitha, B., Mythri, R., Nalini, A., Subbannayya, Y., Harsha, H. C., Kolthur-Seetharam, U. and Bharath, M. M. (2014). Mitochondrial alterations and oxidative stress in an acute transient mouse model of muscle degeneration: Implications for muscular dystrophy and related muscle pathologies.Journal of Biological Chemistry. 289, 485-509.

  55. Kotigadde, S., Anusha G.R., Sandya V., Subbannayya, Y., Subbannayya, T., Nayak, S. (2012). Effect of water storage in silver container on the viability of enteric bacterial pathogens. The Journal of communicable diseases. 44(4):239-243.

  56. Marimuthu, A., Subbannayya, Y., Sahasrabuddhe, N. A., Balakrishnan, L., Syed, N., Sekhar, N. R., Katte, T. V., Pinto, S. M., Srikanth, S. M., Kumar, P., Pawar, H., Kashyap, M. K., Maharudraiah, J., Ashktorab, H., Smoot, D. T., Ramaswamy, G., Kumar, R. V., Cheng, Y., Meltzer, S. J., Roa, J. C., Chaerkady, R., Prasad, T. S. K., Harsha, H. C., Chatterjee, A. and Pandey, A. (2012). SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics - Clinical Applications. 7, 355-366.

  57. Kumar, G. S. S., Venugopal, A. K., Kashyap, M. K., Raju, R., Marimuthu, A., Palapetta, S. M., Subbannayya, Y., Goel, R., Chawla, A., Dikshit, J. B., Tata, P., Harsha, H. C., Maharudraiah, J., Ramachandra, Y. L., Satishchandra, P., Prasad, T. S. K., Pandey, A., Mahadevan, A. and Shankar, S. K. (2012). Gene expression profiling of tuberculous meningitis co-infected with HIV. Journal of Proteomics and Bioinformatics. 5, 235-244.

  58. Prasad, T. S. K., Harsha, H. C., Keerthikumar, S., Sekhar, N. R., Selvan, L. D. N., Kumar, P., Pinto, S. M., Muthusamy, B., Subbannayya, Y., Renuse, S., Chaerkady, R., Mathur, P. P., Ravikumar, R. and Pandey, A. (2012). Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry. Journal of Proteome Research. 11, 247-260.

  59. Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S., Syed, N., Srikanth, M. S., Sathe, G. J., Ahmad, S., Chavan, S. N., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A. (2011). NetSlim: High-confidence curated signaling maps. Database. 2011, bar032.

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